I think the best thing to do would be to close Limewire (COMPLETELY). re-place your files you want to share in the locations you want them. Delete Limewires preference folder (with Limewire completely closed). restart Limewire, which will require you to reconfigure it, including the Shared folders. Let us know if this helps.
instuctions for deleting the Preferences folder are in this thread
http://www.gnutellaforums.com/showth...=fixes+working