Ok. So . . . I have somehow actually managed to fix my little issue. To possibly help others I'll post below what I did to fix it but keep in mind that a lot of what I've done most likely didn't do anything at all.
I tried to reinstall the java as instructed but it said there was no java to update so . . . I dropped this idea and moved on to the next thing.
I then restarted my computer but to no avail, the program still didn't work.
I had a friend send me a 4.11 and 4.9 that had worked on my computer previously. Neither of these would actually open, they'd just hop up and down in the dock for a bit and would then disappear. This is worse that the issue I was having before.
Eventually I went throughout my computer using Spotlight and the keyword "Limewire" and deleted anything that it came up with. I then proceeded to empty my trash can.
Finally, I went to
www.apple.com and downloaded the Security Update 2006-04 (PowerPC) that I believe screwed everything up to begin with. People using another program had the same sort of issues once they d/l the update the first time and they fixed it by using the standalone update and reinstalling the program. Thinking this might work in my sitch too, I gave it a shot. Lo and behold, it worked. I had tried this earlier today but I didn't delete EVERY single file/folder that had limewire in the name first. This may or may not have made a difference but when I deleted all the files first and THEN did the update again, it worked.
I really and truly believe however, that the reason my mini decided to step into gear and work is because I verbally threatened to reinstall it's OS if it didn't behave. This theory seems to make the most logical sense to me.
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Just threaten your computer first and it will straighten up.
Good luck to everyone else who's having the same issue . . . I think there are some more of you out there.