After Limewire install multiple programs dont work
 

I just upgraded to the new free version of Limewire. During the installation I had multiple error messages pop up related to Java, however I continuted the install. After installing i tested Limewire and everything worked fine.

Then I tried opening and using Spybot, Adaware, Registry Mechanic, and Microsofts Spyware program. NONE of these programs worked after installing this new version of Limewire. I uninstalled and reinstalled the Microsoft spyware program but it still did not work. I tried reinstalling Java runtime software and un/reinstalling Limewire. No matter what I do I cannot get these programs listed above to work.
I can't believe how seriously this Limewire install has negatively effected my computer.
I hope someone on this forum can help solve this problem.